DIFFERENCES IN GUT MICROBIOTA MODULATION BY SEMAGLUTIDE, LIRAGLUTIDE AND TIRZEPATIDE
Abstract
Introduction and purpose: Gut microbiota has emerged as a key regulator of metabolic homeostasis. Incretin-based therapies such as semaglutide, liraglutide and tirzepatide not only improve glycemic control and promote weight loss, but may also exert systemic effects through microbiota modulation. This narrative review aims to compare the gut microbiota-related effects of these agents based on current preclinical and clinical evidence.
Material and method: A systematic search of PubMed and Web of Science databases was conducted for full-text studies published between 2020 and 2025. Inclusion criteria encompassed original research in humans and animals evaluating the impact of semaglutide, liraglutide or tirzepatide on gut microbiota. From 136 initial results, 30 eligible studies were included after removing duplicates and applying inclusion criteria.
Results: All three agents promoted increases in beneficial taxa such as Akkermansia muciniphila and SCFA-producing bacteria, and reduced pro-inflammatory genera. Semaglutide was associated with neuroimmune modulation, liraglutide with renal and hepatic benefits, while tirzepatide induced broader taxonomic shifts and diversity restoration, likely due to dual receptor agonism. Most findings derive from animal models, with limited human data available.
Conclusions: Semaglutide, liraglutide and tirzepatide demonstrate both shared and distinct microbiota-modulating properties, which may partly mediate their therapeutic effects. Further clinical studies integrating microbiota profiling and metabolic outcomes are needed to validate these findings and support microbiota-informed treatment strategies.
References
Liu Q, Cai B yu, Zhu L xin, et al. Liraglutide modulates gut microbiome and attenuates nonalcoholic fatty liver in db/db mice. Life Sci. 2020;261. doi:10.1016/j.lfs.2020.118457
Wang Y, Dilidaxi D, Wu Y, Sailike J, Sun X, Nabi X hua. Composite probiotics alleviate type 2 diabetes by regulating intestinal microbiota and inducing GLP-1 secretion in db/db mice. BIOMEDICINE & PHARMACOTHERAPY. 2020;125. doi:10.1016/j.biopha.2020.109914
Wang K, Zhang Z, Hang J, et al. Microbial-host-isozyme analyses reveal microbial DPP4 as a potential antidiabetic target. Science (1979). 2023;381(6657):501+. doi:10.1126/science.add5787
Nguyen T, Gong M, Wen S, et al. The Mechanism of Metabolic Influences on the Endogenous GLP-1 by Oral Antidiabetic Medications in Type 2 Diabetes Mellitus. J Diabetes Res. 2020;2020. doi:10.1155/2020/4727390
Bica IC, Pietroșel VA, Salmen T, et al. The Effects of Cardioprotective Antidiabetic Therapy on Microbiota in Patients with Type 2 Diabetes Mellitus—A Systematic Review. Int J Mol Sci. 2023;24(8). doi:10.3390/ijms24087184
Sun H, Shu J, Tang J, et al. GLP-1 receptor agonists alleviate colonic inflammation by modulating intestinal microbiota and the function of group 3 innate lymphoid cells. Immunology. 2024;172(3):451-468. doi:10.1111/imm.13784
Zhang N, Tao J, Gao L, et al. Liraglutide Attenuates Nonalcoholic Fatty Liver Disease by Modulating Gut Microbiota in Rats Administered a High-Fat Diet. Biomed Res Int. 2020;2020. doi:10.1155/2020/2947549
Smits MM, Fluitman KS, Herrema H, et al. Liraglutide and sitagliptin have no effect on intestinal microbiota composition: A 12-week randomized placebo-controlled trial in adults with type 2 diabetes. Diabetes Metab. 2021;47(5). doi:10.1016/j.diabet.2021.101223
Hu W, Gong W, Yang F, et al. Dual GIP and GLP-1 receptor agonist tirzepatide alleviates hepatic steatosis and modulates gut microbiota and bile acid metabolism in diabetic mice. Int Immunopharmacol. 2025;147. doi:10.1016/j.intimp.2024.113937
Wang Y, Ablimit N, Zhang Y, et al. Novel β-mannanase/GLP-1 fusion peptide high effectively ameliorates obesity in a mouse model by modifying balance of gut microbiota. Int J Biol Macromol. 2021;191:753-763. doi:10.1016/j.ijbiomac.2021.09.150
de Paiva IHR, da Silva RS, Mendonca IP, de Souza JRB, Peixoto CA. Semaglutide Attenuates Anxious and Depressive-Like Behaviors and Reverses the Cognitive Impairment in a Type 2 Diabetes Mellitus Mouse Model Via the Microbiota-Gut-Brain Axis. JOURNAL OF NEUROIMMUNE PHARMACOLOGY. 2024;19(1). doi:10.1007/s11481-024-10142-w
Silva-Veiga FM, Marinho TS, de Souza-Mello V, Aguila MB, Mandarim-de-Lacerda CA. Tirzepatide, a dual agonist of glucose-dependent insulinotropic polypeptide (GIP) and glucagon-like peptide-1 (GLP-1), positively impacts the altered microbiota of obese, diabetic, ovariectomized mice. Life Sci. 2025;361. doi:10.1016/j.lfs.2024.123310
Charpentier J, Briand F, Lelouvier B, et al. Liraglutide targets the gut microbiota and the intestinal immune system to regulate insulin secretion. Acta Diabetol. 2021;58(7):881-897. doi:10.1007/s00592-020-01657-8
Chen F, He L, Li J, et al. Polyethylene Glycol Loxenatide Injection (GLP-1) Protects Vascular Endothelial Cell Function in Middle-Aged and Elderly Patients With Type 2 Diabetes by Regulating Gut Microbiota. Front Mol Biosci. 2022;9. doi:10.3389/fmolb.2022.879294
Kato S, Sato T, Fujita H, Kawatani M, Yamada Y. Effects of GLP-1 receptor agonist on changes in the gut bacterium and the underlying mechanisms. Sci Rep. 2021;11(1). doi:10.1038/s41598-021-88612-x
Yarahmadi A, Afkhami H, Javadi A, Kashfi M. Understanding the complex function of gut microbiota: its impact on the pathogenesis of obesity and beyond: a comprehensive review. Diabetol Metab Syndr. 2024;16(1). doi:10.1186/s13098-024-01561-z
Sun L, Shang B, Lv S, Liu G, Wu Q, Geng Y. Effects of semaglutide on metabolism and gut microbiota in high-fat diet-induced obese mice. Front Pharmacol. 2025;16:1562896. doi:10.3389/fphar.2025.1562896
Batiha GES, Al-kuraishy HM, Al-Gareeb AI, Ashour NA, Negm WA. Potential role of tirzepatide towards Covid-19 infection in diabetic patients: a perspective approach. Inflammopharmacology. 2023;31(4):1683-1693. doi:10.1007/s10787-023-01239-4
Qin S, Bai W, Applegate TJ, et al. Dietary resistant starch ameliorating lipopolysaccharide-induced inflammation in meat ducks associated with the alteration in gut microbiome and glucagon-like peptide 1 signaling. J Anim Sci Biotechnol. 2022;13(1). doi:10.1186/S40104-022-00735-X
Wunderlich M, Miller M, Ritter B, et al. Experimental colonization with H. hepaticus, S. aureus and R. pneumotropicus does not influence the metabolic response to high-fat diet or incretin-analogues in wildtype SOPF mice. Mol Metab. 2024;87. doi:10.1016/j.molmet.2024.101992
Ying X, Rongjiong Z, Kahaer M, Chunhui J, Wulasihan M. Therapeutic efficacy of liraglutide versus metformin in modulating the gut microbiota for treating type 2 diabetes mellitus complicated with nonalcoholic fatty liver disease. Front Microbiol. 2023;14. doi:10.3389/FMICB.2023.1088187
Heiss CN, Manneras-Holm L, Lee YS, et al. The gut microbiota regulates hypothalamic inflammation and leptin sensitivity in Western diet-fed mice via a GLP-1R-dependent mechanism. Cell Rep. 2021;35(8). doi:10.1016/j.celrep.2021.109163
Wang W, Zhang C, Zhang H, Li L, Fan T, Jin Z. The alleviating effect and mechanism of GLP-1 on ulcerative colitis. AGING-US. 2023;15(16):8044-8060.
Yang Q, Deng L, Feng C, Wen J. Comparing the effects of empagliflozin and liraglutide on lipid metabolism and intestinal microflora in diabetic mice. PeerJ. 2024;12. doi:10.7717/peerj.17055
Ma J, Hu X, Zhang W, Tao M, Wang M, Lu W. Comparison of the effects of Liraglutide, Tirzepatide, and Retatrutide on diabetic kidney disease in db/db mice. Endocrine. 2025;87(1):159-169. doi:10.1007/s12020-024-03998-8
Luo Y, Li JE, Zeng H, Zhang Y, Yang S, Liu J. Semaglutide alleviates the pancreatic β cell function via the METTL14 signaling and modulating gut microbiota in type 2 diabetes mellitus mice. Life Sci. 2025;361. doi:10.1016/j.lfs.2024.123328
Qi L, Kang H, Zeng F, et al. Gut microbiota mediates semaglutide attenuation of diabetes-associated cognitive decline. Neurotherapeutics. Published online May 23, 2025:e00615. doi:10.1016/j.neurot.2025.e00615
Gofron KK, Wasilewski A, Malgorzewicz S. Effects of GLP-1 Analogues and Agonists on the Gut Microbiota: A Systematic Review. Nutrients. 2025;17(8). doi:10.3390/nu17081303
Jiang Y, Zhou T, Zhang S, Leng J, Li L, Zhao W. β-Glucan-based superabsorbent hydrogel ameliorates obesity-associated metabolic disorders via delaying gastric emptying, improving intestinal barrier function, and modulating gut microbiota. Int J Biol Macromol. 2025;304(1). doi:10.1016/j.ijbiomac.2025.140846
Qi Y, Dong Y, Chen J, et al. Lactiplantibacillus plantarum SG5 inhibits neuroinflammation in MPTP-induced PD mice through GLP-1/PGC-1α pathway. Exp Neurol. 2025;383. doi:10.1016/j.expneurol.2024.115001
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